| Language of instruction: English |
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Mandatory sequentiality bound on the level of programme components
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Following programme components must have been included in your study programme in a previous education period
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Medical and Molecular Biology DL (3581)
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6.0 stptn |
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There is no data for this choice.
Change the language, year or choose another item in the dropdown list if it is available.
There is no data for this choice.
Change the language, year or choose another item in the dropdown list if it is available.
| Degree programme | | Study hours | Credits | P1 SBU | P1 SP | 2nd Chance Exam1 | Tolerance2 | Final grade3 | |
 | second year Master Bioinformatics - distance learning | Compulsory | 108 | 4,0 | 108 | 4,0 | Yes | Yes | Numerical |  |
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| | | Learning outcomes |
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| The student can handle scientific quantitative research questions, independently, effectively, creatively, and correctly using state-of-the-art design and analysis methodology and software. | - EC
| The student is capable of acquiring new knowledge. | - EC
| The student is able to efficiently acquire, store and process data. | - EC
| The student can critically appraise methodology and challenge proposals for and reported results of data analysis. | - EC
| The student can work in a multidisciplinary, intercultural, and international team. | - EC
| The student knows the international nature of the field of statistical science and data science. | - EC
| The student is an effective written and oral communicator, both within their own field as well as across disciplines. |
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| | EC = learning outcomes DC = partial outcomes BC = evaluation criteria |
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The student has knowledge about molecular biology and understands the basic concepts of chemistry, physics, computer programming, combinatorics, statistics, biochemistry and biosynthesis.
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Bioinformatics; protein identification; protein expression analysis; mass spectrometry.
The course focuses on problems related to the analysis of protein sequences and protein expression. Examples of topics: protein identification using tandem mass spectrometry by database searches; analysis of protein expression data obtained by using mass spectrometry; diagnostic classification using protein mass spectra, isotope computation and low-level preprocessing of mass spectral data, quantitative proteomics by isobaric labels, isotope modeling, wavelet analysis for peak detection and noise removal.
Student possesses a general knowledge about topics and problems related to the analysis of protein sequences and protein expression. S/he is familiar with issues, methods and software associated with spectral interpretation. S/he is familiar with various experimental techniques used to study protein expression levels. S/he knows basic problems and methods related to the analysis of data obtained by using the techniques.
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Distance learning ✔
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Project ✔
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Response lecture ✔
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Discussion/debate ✔
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Homework ✔
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Presentation ✔
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Semester 1 (4,00sp)
| Evaluation method | |
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| Written evaluation during teaching period | 20 % |
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| Transfer of partial marks within the academic year | ✔ |
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| Off campus online evaluation/exam | ✔ |
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| For the full evaluation/exam | ✔ |
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| Evaluation conditions (participation and/or pass) | ✔ |
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| Conditions | A student must at least attend all components of the evaluation.
All projects should be submitted before the deadline. |
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| Consequences | Students get an "X" score if they do not meet the conditions. |
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Second examination period
| Evaluation second examination opportunity different from first examination opprt | |
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| Compulsory course material |
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Lecture notes; photo/electronic copies of relevant book chapters and papers; lab visit |
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| Recommended reading |
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- [Principles of Proteomics],[Richard Twyman],[2],[Garland Science],[9780815344728],[Available as e-book: https://www.taylorfrancis.com/books/mono/10.1201/9780429258527/principles-proteomics-ph-cfe-richard-twyman-george]
- [Computational Methods for Mass Spectrometry Proteomics],[Ingvar Eidhammer; Kristian Flikka; Lennart Martens; Svein-Ole Mikalsen],[],[Wiley],[9780470512975],[Available as e-book: https://onlinelibrary-wiley-com.bib-proxy.uhasselt.be/doi/book/10.1002/9780470724309]
- [Protein Bioinformatics: An Algorithmic Approach to Sequence and Structure Analysis],[Ingvar Eidhammer; Inge Jonassen; William R. Taylor],[],[Wiley],[9780470848395],[Available as e-book: https://onlinelibrary-wiley-com.bib-proxy.uhasselt.be/doi/book/10.1002/9780470092620]
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| second year Master Biostatistics - distance learning | Optional | 108 | 4,0 | 108 | 4,0 | Yes | Yes | Numerical | |
| second year Data Science - distance learning | Optional | 108 | 4,0 | 108 | 4,0 | Yes | Yes | Numerical | |
| second year Quantitative Epidemiology - distance learning | Optional | 108 | 4,0 | 108 | 4,0 | Yes | Yes | Numerical | |
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| | | Learning outcomes |
- EC
| The student can handle scientific quantitative research questions, independently, effectively, creatively, and correctly using state-of-the-art design and analysis methodology and software. | - EC
| The student is capable of acquiring new knowledge. | - EC
| The student is able to efficiently acquire, store and process data. | - EC
| The student can critically appraise methodology and challenge proposals for and reported results of data analysis. | - EC
| The student can work in a multidisciplinary, intercultural, and international team. | - EC
| The student knows the international nature of the field of statistical science and data science. | - EC
| The student is an effective written and oral communicator, both within their own field as well as across disciplines. |
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| | EC = learning outcomes DC = partial outcomes BC = evaluation criteria |
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The student has knowledge about molecular biology and understands the basic concepts of chemistry, physics, computer programming, combinatorics, statistics, biochemistry and biosynthesis.
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|
|
Bioinformatics; protein identification; protein expression analysis; mass spectrometry.
The course focuses on problems related to the analysis of protein sequences and protein expression. Examples of topics: protein identification using tandem mass spectrometry by database searches; analysis of protein expression data obtained by using mass spectrometry; diagnostic classification using protein mass spectra, isotope computation and low-level preprocessing of mass spectral data, quantitative proteomics by isobaric labels, isotope modeling, wavelet analysis for peak detection and noise removal.
Student possesses a general knowledge about topics and problems related to the analysis of protein sequences and protein expression. S/he is familiar with issues, methods and software associated with spectral interpretation. S/he is familiar with various experimental techniques used to study protein expression levels. S/he knows basic problems and methods related to the analysis of data obtained by using the techniques.
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Distance learning ✔
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Project ✔
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Response lecture ✔
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Discussion/debate ✔
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Homework ✔
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|
Presentation ✔
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Semester 1 (4,00sp)
| Evaluation method | |
|
| Written evaluation during teaching period | 20 % |
|
| Transfer of partial marks within the academic year | ✔ |
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|
|
|
|
|
|
|
| Off campus online evaluation/exam | ✔ |
|
| For the full evaluation/exam | ✔ |
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|
|
| Evaluation conditions (participation and/or pass) | ✔ |
|
| Conditions | A student must at least attend all components of the evaluation.
All projects should be submitted before the deadline. |
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|
|
| Consequences | Students get an "X" score if they do not meet the conditions. |
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|
Second examination period
| Evaluation second examination opportunity different from first examination opprt | |
|
|
| Compulsory course material |
| |
Lecture notes; photo/electronic copies of relevant book chapters and papers; lab visit |
|
|
| Recommended reading |
| |
- [Principles of Proteomics],[Richard Twyman],[2],[Garland Science],[9780815344728],[Available as e-book: https://www.taylorfrancis.com/books/mono/10.1201/9780429258527/principles-proteomics-ph-cfe-richard-twyman-george]
- [Computational Methods for Mass Spectrometry Proteomics],[Ingvar Eidhammer; Kristian Flikka; Lennart Martens; Svein-Ole Mikalsen],[],[Wiley],[9780470512975],[Available as e-book: https://onlinelibrary-wiley-com.bib-proxy.uhasselt.be/doi/book/10.1002/9780470724309]
- [Protein Bioinformatics: An Algorithmic Approach to Sequence and Structure Analysis],[Ingvar Eidhammer; Inge Jonassen; William R. Taylor],[],[Wiley],[9780470848395],[Available as e-book: https://onlinelibrary-wiley-com.bib-proxy.uhasselt.be/doi/book/10.1002/9780470092620]
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1 Education, Examination and Legal Position Regulations art.12.2, section 2. |
| 2 Education, Examination and Legal Position Regulations art.16.9, section 2. |
3 Education, Examination and Legal Position Regulations art.15.1, section 3.
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| Legend |
| SBU : course load | SP : ECTS | N : Dutch | E : English |
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